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CEC
2011
IEEE
14 years 2 months ago
Comparing alternative energy functions for the HP model of protein structure prediction
Abstract—Protein structure prediction is the problem of finding the functional conformation of a protein given only its amino uence. The HP lattice model is an abstract formulat...
Mario Garza-Fabre, Eduardo Rodriguez-Tello, Gregor...
CORR
2012
Springer
177views Education» more  CORR 2012»
13 years 10 months ago
Evolution of public cooperation on interdependent networks: The impact of biased utility functions
– We study the evolution of public cooperation on two interdependent networks that are connected by means of a utility function, which determines to what extent payoffs in one n...
Zhen Wang, Attila Szolnoki, Matjaz Perc
114
Voted
FPL
2009
Springer
79views Hardware» more  FPL 2009»
15 years 7 months ago
A reconfigurable architecture for the Phylogenetic Likelihood Function
As FPGA devices become larger, more coarse-grain modules coupled with large scale reconfigurable fabric become available, thus enabling new classes of applications to run effici...
Nikolaos Alachiotis, Alexandros Stamatakis, Euripi...
118
Voted
GECCO
2008
Springer
131views Optimization» more  GECCO 2008»
15 years 4 months ago
Rigorous analyses of fitness-proportional selection for optimizing linear functions
Rigorous runtime analyses of evolutionary algorithms (EAs) mainly investigate algorithms that use elitist selection methods. Two algorithms commonly studied are Randomized Local S...
Edda Happ, Daniel Johannsen, Christian Klein, Fran...
BMCBI
2010
109views more  BMCBI 2010»
15 years 3 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos