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BMCBI
2010
189views more  BMCBI 2010»
15 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
WAIM
2007
Springer
16 years 1 months ago
Improvements of HITS Algorithms for Spam Links
The HITS algorithm proposed by Kleinberg is one of the representative methods of scoring Web pages by using hyperlinks. In the days when the algorithm was proposed, most of the pag...
Yasuhito Asano, Yu Tezuka, Takao Nishizeki
ICDM
2005
IEEE
166views Data Mining» more  ICDM 2005»
16 years 15 days ago
An Algorithm for In-Core Frequent Itemset Mining on Streaming Data
Frequent itemset mining is a core data mining operation and has been extensively studied over the last decade. This paper takes a new approach for this problem and makes two major...
Ruoming Jin, Gagan Agrawal
BMCBI
2010
139views more  BMCBI 2010»
15 years 7 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
BMCBI
2010
123views more  BMCBI 2010»
15 years 7 months ago
Decoding HMMs using the k best paths: algorithms and applications
Background: Traditional algorithms for hidden Markov model decoding seek to maximize either the probability of a state path or the number of positions of a sequence assigned to th...
Daniel G. Brown 0001, Daniil Golod