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BMCBI
2006
129views more  BMCBI 2006»
14 years 10 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
BMCBI
2007
164views more  BMCBI 2007»
14 years 9 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
GLOBECOM
2009
IEEE
15 years 4 months ago
Maximum-Likelihood Sequence Detector for Dynamic Mode High Density Probe Storage
— There is an ever increasing need for storing data in smaller and smaller form factors driven by the ubiquitous use and increased demands of consumer electronics. A new approach...
Naveen Kumar, Pranav Agarwal, Aditya Ramamoorthy, ...
BMCBI
2007
126views more  BMCBI 2007»
14 years 9 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
ACL
2004
14 years 11 months ago
Using Conditional Random Fields to Predict Pitch Accents in Conversational Speech
The detection of prosodic characteristics is an important aspect of both speech synthesis and speech recognition. Correct placement of pitch accents aids in more natural sounding ...
Michelle L. Gregory, Yasemin Altun