We propose a fast algorithm, EMD-L1, for computing the Earth Mover's Distance (EMD) between a pair of histograms. Compared to the original formulation, EMD-L1 has a largely si...
This editorial announces Algorithms for Molecular Biology, a new online open access journal published by BioMed Central. By launching the first open access journal on algorithmic ...
We propose an integral image based algorithm to extract feature covariance matrices of all possible rectangular regions within a given image. Covariance is an essential indicator ...
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...