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» Finding approximate tandem repeats in genomic sequences
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BMCBI
2006
116views more  BMCBI 2006»
14 years 11 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
116
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BMCBI
2002
120views more  BMCBI 2002»
14 years 11 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
ALMOB
2006
80views more  ALMOB 2006»
14 years 11 months ago
Pattern statistics on Markov chains and sensitivity to parameter estimation
Background: In order to compute pattern statistics in computational biology a Markov model is commonly used to take into account the sequence composition. Usually its parameter mu...
Grégory Nuel
BMCBI
2008
116views more  BMCBI 2008»
14 years 11 months ago
Algorithm of OMA for large-scale orthology inference
Since the publication of our article (Roth, Gonnet, and Dessimoz: BMC Bioinformatics 2008 9: 518), we have noticed several errors, which we correct in the following. Correction We...
Alexander C. J. Roth, Gaston H. Gonnet, Christophe...