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» Fixed-Parameter Algorithms in Phylogenetics
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73
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BMCBI
2007
175views more  BMCBI 2007»
14 years 10 months ago
CLUSS: Clustering of protein sequences based on a new similarity measure
Background: The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important. The challenge is to identify subfamilies...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski...
93
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FCCM
2007
IEEE
117views VLSI» more  FCCM 2007»
15 years 4 months ago
FPGA Acceleration of Gene Rearrangement Analysis
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Jason D. Bakos
BIRD
2008
Springer
159views Bioinformatics» more  BIRD 2008»
15 years 6 days ago
Exploration of Evolutionary Relations between Protein Structures
Abstract. We describe a new method for the exploration of evolutionary relations between protein structures. The approach is based on the ESSM algorithm for detecting structural mu...
Natalja Kurbatova, Juris Viksna
EMNLP
2007
14 years 11 months ago
A Probabilistic Approach to Diachronic Phonology
We present a probabilistic model of diachronic phonology in which individual word forms undergo stochastic edits along the branches of a phylogenetic tree. Our approach allows us ...
Alexandre Bouchard-Côté, Percy Liang,...
84
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UAI
2008
14 years 11 months ago
Bayesian Out-Trees
A Bayesian treatment of latent directed graph structure for non-iid data is provided where each child datum is sampled with a directed conditional dependence on a single unknown p...
Tony Jebara