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SOSYM
2010
107views more  SOSYM 2010»
15 years 2 months ago
A UML/OCL framework for the analysis of graph transformation rules
In this paper we present an approach for the analysis of graph transformation rules based on an intermediate OCL representation. We translate different rule semantics into OCL, to...
Jordi Cabot, Robert Clarisó, Esther Guerra,...
174
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BMCBI
2011
14 years 10 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
TOOLS
1999
IEEE
15 years 8 months ago
Component Frameworks - A Case Study
This paper reports on an effort to use both the system theoretic DEVS (discrete event simulation) formalism and the JavaBeans component model as a basis for a componentbased discr...
Herbert Praehofer, Johannes Sametinger, Alois Stri...
FLAIRS
2008
15 years 6 months ago
A First-Order Bayesian Tool for Probabilistic Ontologies
One of the major weaknesses of current research on the Semantic Web (SW) is the lack of proper means to represent and reason with uncertainty. A number of recent efforts from the ...
Paulo Cesar G. da Costa, Marcelo Ladeira, Rommel N...
BMCBI
2007
112views more  BMCBI 2007»
15 years 4 months ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...