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» GCA: A Massively Parallel Model
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PPOPP
2006
ACM
15 years 3 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
ICDM
2010
IEEE
264views Data Mining» more  ICDM 2010»
14 years 7 months ago
Block-GP: Scalable Gaussian Process Regression for Multimodal Data
Regression problems on massive data sets are ubiquitous in many application domains including the Internet, earth and space sciences, and finances. In many cases, regression algori...
Kamalika Das, Ashok N. Srivastava
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
15 years 3 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
ESA
1998
Springer
162views Algorithms» more  ESA 1998»
15 years 1 months ago
External Memory Algorithms
Abstract. Data sets in large applications are often too massive to t completely inside the computer's internal memory. The resulting input output communication or I O between ...
Jeffrey Scott Vitter
96
Voted
HPDC
2010
IEEE
14 years 9 months ago
A GPU accelerated storage system
Massively multicore processors, like, for example, Graphics Processing Units (GPUs), provide, at a comparable price, a one order of magnitude higher peak performance than traditio...
Abdullah Gharaibeh, Samer Al-Kiswany, Sathish Gopa...