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NAR
2011
212views Computer Vision» more  NAR 2011»
14 years 8 months ago
The Sequence Read Archive
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data ...
Rasko Leinonen, Hideaki Sugawara, Martin Shumway
IPPS
2007
IEEE
15 years 11 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
HPCC
2007
Springer
15 years 11 months ago
An Adaptive Parallel Hierarchical Clustering Algorithm
Clustering of data has numerous applications and has been studied extensively. It is very important in Bioinformatics and data mining. Though many parallel algorithms have been des...
Zhaopeng Li, Kenli Li, Degui Xiao, Lei Yang
LSGRID
2004
Springer
15 years 10 months ago
Development of a Grid Infrastructure for Functional Genomics
The BRIDGES project is incrementally developing and exploring database integration over six geographically distributed research sites with the framework of a Wellcome Trust biomedi...
Richard O. Sinnott, Micha Bayer, Derek Houghton, D...
IWPEC
2010
Springer
15 years 2 months ago
Partial Kernelization for Rank Aggregation: Theory and Experiments
RANK AGGREGATION is important in many areas ranging from web search over databases to bioinformatics. The underlying decision problem KEMENY SCORE is NP-complete even in case of fo...
Nadja Betzler, Robert Bredereck, Rolf Niedermeier