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BICOB
2009
Springer
15 years 4 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
ICEIS
2009
IEEE
15 years 4 months ago
Semi-supervised Information Extraction from Variable-length Web-page Lists
We propose two methods for constructing automated programs for extraction of information from a class of web pages that are very common and of high practical significance - varia...
Daniel Nikovski, Alan Esenther, Akihiro Baba
BMCBI
2002
134views more  BMCBI 2002»
14 years 9 months ago
CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes
Background: Improvements in DNA sequencing technology and methodology have led to the rapid expansion of databases comprising DNA sequence, gene and genome data. Lower operational...
Nikhat Zafar, Raja Mazumder, Donald Seto
APPROX
2010
Springer
168views Algorithms» more  APPROX 2010»
14 years 11 months ago
Lower Bounds for Local Monotonicity Reconstruction from Transitive-Closure Spanners
Abstract. Given a directed graph G = (V, E) and an integer k 1, a ktransitive-closure-spanner (k-TC-spanner) of G is a directed graph H = (V, EH ) that has (1) the same transitive...
Arnab Bhattacharyya, Elena Grigorescu, Madhav Jha,...
DEBU
2010
152views more  DEBU 2010»
14 years 7 months ago
Implementing an Append-Only Interface for Semiconductor Storage
Solid-state disks are currently based on NAND flash and expose a standard disk interface. To accommodate limitations of the medium, solid-state disk implementations avoid rewritin...
Colin W. Reid, Philip A. Bernstein