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» In Search of Optimal Codes for DNA Computing
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BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
15 years 3 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
ISMB
1994
14 years 10 months ago
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence
A new version of the GRAIL system (Uberbacher and Mural, 1991; Mural et al., 1992; Uberbacher et al., 1993), called GRAILII, has recently been developed (Xu et al., 1994). GRAILII...
Yin Xu, J. Ralph Einstein, Richard J. Mural, Manes...
IPPS
2003
IEEE
15 years 2 months ago
A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics
We have developed a new algorithm that allows the exhaustive determination of words of up to 12 nucleotides in DNA sequences. It is fast enough as to be used at a genomic scale ru...
Vicente Arnau, Ignacio Marín
CLUSTER
2008
IEEE
15 years 3 months ago
A comparison of search heuristics for empirical code optimization
—This paper describes the application of various search techniques to the problem of automatic empirical code optimization. The search process is a critical aspect of auto-tuning...
Keith Seymour, Haihang You, Jack Dongarra
ICIP
2000
IEEE
15 years 11 months ago
Fast Code Enhancement with Local Search for Fractal Image Compression
Optimal fractal coding consists of finding in a finite set of contractive affine mappings one whose unique fixed point is closest to the original image. Optimal fractal coding is ...
Raouf Hamzaoui, Dietmar Saupe, Michael Hiller