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» In Search of Optimal Codes for DNA Computing
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CPHYSICS
2006
204views more  CPHYSICS 2006»
14 years 9 months ago
Genetically controlled random search: a global optimization method for continuous multidimensional functions
A new stochastic method for locating the global minimum of a multidimensional function inside a rectangular hyperbox is presented. A sampling technique is employed that makes use ...
Ioannis G. Tsoulos, Isaac E. Lagaris
ALMOB
2006
138views more  ALMOB 2006»
14 years 9 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
JPDC
2006
117views more  JPDC 2006»
14 years 9 months ago
Efficient synthesis of out-of-core algorithms using a nonlinear optimization solver
We address the problem of efficient out-of-core code generation for a special class of imperfectly nested loops encoding tensor contractions arising in quantum chemistry computati...
Sandhya Krishnan, Sriram Krishnamoorthy, Gerald Ba...
BMCBI
2007
233views more  BMCBI 2007»
14 years 9 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
IAJIT
2010
150views more  IAJIT 2010»
14 years 8 months ago
Optimal DSP Based Integer Motion Estimation Implementation for H.264/AVC Baseline Encoder
: The coding gain of the H.264/AVC video encoder mainly comes from the new incorporated prediction tools. However, their enormous computation and ultrahigh memory bandwidth are the...
Imen Werda, Haithem Chaouch, Amine Samet, Mohamed ...