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» Inference Algorithms for Similarity Networks
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BMCBI
2006
202views more  BMCBI 2006»
14 years 9 months ago
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Background: The learning of global genetic regulatory networks from expression data is a severely under-constrained problem that is aided by reducing the dimensionality of the sea...
David J. Reiss, Nitin S. Baliga, Richard Bonneau
BMCBI
2006
125views more  BMCBI 2006»
14 years 9 months ago
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
Metabolic networks are naturally represented as directed hypergraphs in such a way that metabolites are nodes and enzyme-catalyzed reactions form (hyper)edges. The familiar operat...
Christian V. Forst, Christoph Flamm, Ivo L. Hofack...
BMCBI
2007
144views more  BMCBI 2007»
14 years 9 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
ICDM
2007
IEEE
162views Data Mining» more  ICDM 2007»
15 years 1 months ago
Exploiting Network Structure for Active Inference in Collective Classification
Active inference seeks to maximize classification performance while minimizing the amount of data that must be labeled ex ante. This task is particularly relevant in the context o...
Matthew J. Rattigan, Marc Maier, David Jensen, Bin...
JCB
2002
160views more  JCB 2002»
14 years 9 months ago
Inference from Clustering with Application to Gene-Expression Microarrays
There are many algorithms to cluster sample data points based on nearness or a similarity measure. Often the implication is that points in different clusters come from different u...
Edward R. Dougherty, Junior Barrera, Marcel Brun, ...