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» Inferring Phylogenetic Trees Using Answer Set Programming
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RECOMB
2008
Springer
15 years 12 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
BMCBI
2006
108views more  BMCBI 2006»
14 years 11 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
AUSAI
2004
Springer
15 years 5 months ago
MML Inference of Oblique Decision Trees
We propose a multivariate decision tree inference scheme by using the minimum message length (MML) principle (Wallace and Boulton, 1968; Wallace and Dowe, 1999). The scheme uses MM...
Peter J. Tan, David L. Dowe
PCI
2005
Springer
15 years 5 months ago
Initial Experiences Porting a Bioinformatics Application to a Graphics Processor
Bioinformatics applications are one of the most relevant and compute-demanding applications today. While normally these applications are executed on clusters or dedicated parallel ...
Maria Charalambous, Pedro Trancoso, Alexandros Sta...
BMCBI
2010
110views more  BMCBI 2010»
14 years 11 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec