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    » Integrative analysis of gene expression and copy number alte...
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    BMCBI
    2004
    146views more  BMCBI 2004»
    Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    13 years 6 months ago
    Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    Download  www.biomedcentral.com
    Background: Functional genomics studies are yielding information about regulatory processes in the cell at an unprecedented scale. In the yeast S. cerevisiae, DNA microarrays have...
    Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
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    BMCBI
    2005
    94views more  BMCBI 2005»
    Visualization-based discovery and analysis of genomic aberrations in microarray data
    13 years 6 months ago
    Visualization-based discovery and analysis of genomic aberrations in microarray data
    Download  www.biomedcentral.com
    Background: Chromosomal copy number changes (aneuploidies) play a key role in cancer progression and molecular evolution. These copy number changes can be studied using microarray...
    Chad L. Myers, Xing Chen, Olga G. Troyanskaya
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    BMCBI
    2011
    229views Artificial Intelligence» more  BMCBI 2011»
    The PathOlogist: An Automated Tool for Pathway-Centric Analysis
    13 years 26 days ago
    The PathOlogist: An Automated Tool for Pathway-Centric Analysis
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    Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
    Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
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    BMCBI
    2010
    151views more  BMCBI 2010»
    TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and e
    13 years 6 months ago
    TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and e
    Download  www.biomedcentral.com
    Background: Identification of transcription factors (TFs) involved in a biological process is the first step towards a better understanding of the underlying regulatory mechanisms...
    Xiaoqi Cui, Tong Wang, Huann-Sheng Chen, Victor Bu...
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    HIPC
    2009
    Springer
    212views Distributed And Parallel Com...» more  HIPC 2009»
    Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
    13 years 4 months ago
    Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
    Download  www.cse.buffalo.edu
    Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
    Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
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