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» Introduction to Modeling and Simulation
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BMCBI
2005
92views more  BMCBI 2005»
15 years 3 months ago
A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...
Andreas Möglich, Daniel Weinfurtner, Till Mau...
DAGSTUHL
2006
15 years 4 months ago
Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting
ed Abstract Membrane systems are models of computation inspired by the structure and the function of biological cells. The model was introduced in 1998 by Gh. Paun and since then m...
Matteo Cavaliere, Sean Sedwards
IPPS
2007
IEEE
15 years 9 months ago
A Framework for Modeling Operating System Mechanisms in the Simulation of Network Protocols for Real-Time Distributed Systems
In this paper we present a software tool for the simulation of distributed real-time embedded systems. Our tool is based on the popular NS-2 package for simulating the networking ...
Paolo Pagano, Prashant Batra, Giuseppe Lipari
DAC
2003
ACM
16 years 4 months ago
Using a formal specification and a model checker to monitor and direct simulation
We describe a technique for verifying that a hardware design correctly implements a protocol-level formal specification. Simulation steps are translated to protocol state transiti...
Serdar Tasiran, Yuan Yu, Brannon Batson
125
Voted
DATE
2003
IEEE
108views Hardware» more  DATE 2003»
15 years 8 months ago
Comparing Analytical Modeling with Simulation for Network Processors: A Case Study
Programming network processors remains an art due to the variety of different network processor architectures and due to little support to reason and explore implementations on su...
Matthias Gries, Chidamber Kulkarni, Christian Saue...