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» Kernel Based Functional Gene Grouping
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SAC
2004
ACM
15 years 2 months ago
Time-frequency feature detection for time-course microarray data
Gene clustering based on microarray data provides useful functional information to the working biologists. Many current gene-clustering algorithms rely on Euclidean-based distance...
Jiawu Feng, Paolo Emilio Barbano, Bud Mishra
WAIM
2009
Springer
15 years 2 months ago
Kernel-Based Transductive Learning with Nearest Neighbors
In the k-nearest neighbor (KNN) classifier, nearest neighbors involve only labeled data. That makes it inappropriate for the data set that includes very few labeled data. In this ...
Liangcai Shu, Jinhui Wu, Lei Yu, Weiyi Meng
BMCBI
2007
149views more  BMCBI 2007»
14 years 9 months ago
Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
Background: Evolutionary conservation has been used successfully to help identify cis-acting DNA regions that are important in regulating tissue-specific gene expression. Motivate...
Xueping Yu, Jimmy J. Lin, Donald J. Zack, Jiang Qi...
107
Voted
BMCBI
2011
14 years 4 months ago
Predicting functionally important SNP classes based on negative selection
Background: With the advent of cost-effective genotyping technologies, genome-wide association studies allow researchers to examine hundreds of thousands of single nucleotide poly...
Mark A. Levenstien, Robert J. Klein
BMCBI
2008
145views more  BMCBI 2008»
14 years 9 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...