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RECOMB
2005
Springer
15 years 10 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
RECOMB
2002
Springer
15 years 10 months ago
Inferring Piecewise Ancestral History from Haploid Sequences
There has been considerable recent interest in the use of haplotype structure to aid in the design and analysis of case-control association studies searching for genetic predictors...
Russell Schwartz, Andrew G. Clark, Sorin Istrail
RECOMB
2002
Springer
15 years 10 months ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...
RECOMB
2002
Springer
15 years 10 months ago
From promoter sequence to expression: a probabilistic framework
We present a probabilistic framework that models the process by which transcriptional binding explains the mRNA expression of different genes. Our joint probabilistic model unifie...
Eran Segal, Yoseph Barash, Itamar Simon, Nir Fried...
ICALP
2009
Springer
15 years 10 months ago
LTL Path Checking Is Efficiently Parallelizable
We present an AC1 (logDCFL) algorithm for checking LTL formulas over finite paths, thus establishing that the problem can be efficiently parallelized. Our construction provides a f...
Lars Kuhtz, Bernd Finkbeiner