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BMCBI
2002
129views more  BMCBI 2002»
14 years 11 months ago
SeqHound: biological sequence and structure database as a platform for bioinformatics research
Background: SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server platfor...
Katerina Michalickova, Gary D. Bader, Michel Dumon...
BMCBI
2010
191views more  BMCBI 2010»
14 years 11 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
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BMCBI
2006
102views more  BMCBI 2006»
14 years 11 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
AEI
2010
115views more  AEI 2010»
14 years 11 months ago
BRAHMS: Novel middleware for integrated systems computation
Abstract-- Computational modellers are becoming increasingly interested in building large, eclectic, biological models. These may integrate nervous system components at various lev...
Benjamin Mitchinson, Tak-Shing Chan, Jonathan M. C...
IPPS
2007
IEEE
15 years 5 months ago
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology
Ribonucleic acid (RNA) molecules play important roles in many biological processes including gene expression and regulation. An RNA molecule is a linear polymer which folds back o...
Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, ...