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» Large Event Traces in Parallel Performance Analysis
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ICCS
2009
Springer
14 years 7 months ago
Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures
The Jaccard/Tanimoto coefficient is an important workload, used in a large variety of problems including drug design fingerprinting, clustering analysis, similarity web searching a...
Vipin Sachdeva, Douglas M. Freimuth, Chris Mueller
IPPS
2007
IEEE
15 years 3 months ago
Optimizing the Fast Fourier Transform on a Multi-core Architecture
The rapid revolution in microprocessor chip architecture due to multicore technology is presenting unprecedented challenges to the application developers as well as system softwar...
Long Chen, Ziang Hu, Junmin Lin, Guang R. Gao
BMCBI
2011
14 years 1 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
SIGMOD
2005
ACM
127views Database» more  SIGMOD 2005»
15 years 9 months ago
Fossilized Index: The Linchpin of Trustworthy Non-Alterable Electronic Records
As critical records are increasingly stored in electronic form, which tends to make for easy destruction and clandestine modification, it is imperative that they be properly manag...
Qingbo Zhu, Windsor W. Hsu
BMCBI
2010
149views more  BMCBI 2010»
14 years 9 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...