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CP
2001
Springer
15 years 2 months ago
Fast Optimal Instruction Scheduling for Single-Issue Processors with Arbitrary Latencies
Instruction scheduling is one of the most important steps for improving the performance of object code produced by a compiler. The local instruction scheduling problem is to nd a m...
Peter van Beek, Kent D. Wilken
ICCAD
1999
IEEE
181views Hardware» more  ICCAD 1999»
15 years 2 months ago
A new heuristic for rectilinear Steiner trees
The minimum rectilinear Steiner tree (RST) problem is one of the fundamental problems in the field of electronic design automation. The problem is NP-hard, and much work has been ...
Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganle...
RECOMB
1997
Springer
15 years 2 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
CC
2008
Springer
193views System Software» more  CC 2008»
14 years 12 months ago
Automatic Transformations for Communication-Minimized Parallelization and Locality Optimization in the Polyhedral Model
The polyhedral model provides powerful abstractions to optimize loop nests with regular accesses. Affine transformations in this model capture a complex sequence of execution-reord...
Uday Bondhugula, Muthu Manikandan Baskaran, Sriram...
ALMOB
2006
138views more  ALMOB 2006»
14 years 10 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh