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FPGA
2010
ACM
232views FPGA» more  FPGA 2010»
14 years 9 months ago
High-throughput bayesian computing machine with reconfigurable hardware
We use reconfigurable hardware to construct a high throughput Bayesian computing machine (BCM) capable of evaluating probabilistic networks with arbitrary DAG (directed acyclic gr...
Mingjie Lin, Ilia Lebedev, John Wawrzynek
BMCBI
2007
143views more  BMCBI 2007»
14 years 9 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
93
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CORR
2008
Springer
150views Education» more  CORR 2008»
14 years 9 months ago
Message-passing for Maximum Weight Independent Set
Abstract--In this paper, we investigate the use of messagepassing algorithms for the problem of finding the max-weight independent set (MWIS) in a graph. First, we study the perfor...
Sujay Sanghavi, Devavrat Shah, Alan S. Willsky
ALMOB
2006
138views more  ALMOB 2006»
14 years 9 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
DCG
2006
110views more  DCG 2006»
14 years 9 months ago
High-Dimensional Centrally Symmetric Polytopes with Neighborliness Proportional to Dimension
Let A be a d by n matrix, d < n. Let C be the regular cross polytope (octahedron) in Rn . It has recently been shown that properties of the centrosymmetric polytope P = AC are ...
David L. Donoho