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RECOMB
2002
Springer
16 years 24 days ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
RECOMB
2001
Springer
16 years 24 days ago
A new approach to sequence comparison: normalized sequence alignment
The Smith-Waterman algorithm for local sequence alignment is one of the most important techniques in computational molecular biology. This ingenious dynamic programming approach w...
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. ...
98
Voted
EDBT
2006
ACM
120views Database» more  EDBT 2006»
16 years 18 days ago
Similarity Search on Time Series Based on Threshold Queries
Similarity search in time series data is required in many application fields. The most prominent work has focused on similarity search considering either complete time series or si...
Johannes Aßfalg, Hans-Peter Kriegel, Peer Kr...
ICCAD
2008
IEEE
105views Hardware» more  ICCAD 2008»
15 years 9 months ago
Parameterized transient thermal behavioral modeling for chip multiprocessors
In this paper, we propose a new architecture-level parameterized transient thermal behavioral modeling algorithm for emerging thermal related design and optimization problems for ...
Duo Li, Sheldon X.-D. Tan, Eduardo H. Pacheco, Mur...
POPL
2010
ACM
15 years 7 months ago
Lightweight asynchrony using parasitic threads
Message-passing is an attractive thread coordination mechanism because it cleanly delineates points in an execution when threads communicate, and unifies synchronization and comm...
K. C. Sivaramakrishnan, Lukasz Ziarek, Raghavendra...