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DATE
2009
IEEE
159views Hardware» more  DATE 2009»
15 years 11 months ago
Design and implementation of a database filter for BLAST acceleration
— BLAST is a very popular Computational Biology algorithm. Since it is computationally expensive it is a natural target for acceleration research, and many reconfigurable archite...
Panagiotis Afratis, Constantinos Galanakis, Euripi...
XSYM
2009
Springer
139views Database» more  XSYM 2009»
15 years 11 months ago
A Data Parallel Algorithm for XML DOM Parsing
Abstract. The extensible markup language XML has become the de facto standard for information representation and interchange on the Internet. XML parsing is a core operation perfor...
Bhavik Shah, Praveen Rao, Bongki Moon, Mohan Rajag...
WEBI
2007
Springer
15 years 11 months ago
Concordance-Based Entity-Oriented Search
— We consider the problem of finding the relevant named entities in response to a search query over a given text corpus. Entity search can readily be used to augment conventiona...
Mikhail Bautin, Steven Skiena
WILF
2007
Springer
170views Fuzzy Logic» more  WILF 2007»
15 years 11 months ago
Time-Series Alignment by Non-negative Multiple Generalized Canonical Correlation Analysis
Background: Quantitative analysis of differential protein expressions requires to align temporal elution measurements from liquid chromatography coupled to mass spectrometry (LC/M...
Bernd Fischer, Volker Roth, Joachim M. Buhmann
CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
15 years 10 months ago
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays
Perhaps the most common question that a microarray study can ask is, “Between two given biological conditions, which genes exhibit changed expression levels?” Existing methods...
Will Sheffler, Eli Upfal, John Sedivy, William Sta...