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IFIP
2004
Springer
15 years 10 months ago
New-HOPLA: A Higher-order Process Language with Name Generation
Abstract This paper introduces new-HOPLA, a concise but powerful language for higherorder nondeterministic processes with name generation. Its origins as a metalanguage for domain ...
Glynn Winskel, Francesco Zappa Nardelli
SIMUTOOLS
2008
15 years 6 months ago
Snoopy: a tool to design and animate/simulate graph-based formalisms
We sketch the fundamental properties and features of Snoopy, a tool to model and execute (animate, simulate) hierarchical graph-based system descriptions. The tool comes along wit...
Monika Heiner, Ronny Richter, Martin Schwarick
BMCBI
2010
129views more  BMCBI 2010»
15 years 5 months ago
Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks
Background: Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological fu...
Lina Chen, Hong Wang, Liangcai Zhang, Wan Li, Qian...
BMCBI
2007
152views more  BMCBI 2007»
15 years 5 months ago
Difference-based clustering of short time-course microarray data with replicates
Background: There are some limitations associated with conventional clustering methods for short time-course gene expression data. The current algorithms require prior domain know...
Jihoon Kim, Ju Han Kim
BMCBI
2006
130views more  BMCBI 2006»
15 years 5 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...