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» Maximal Causality Analysis
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SPAA
2010
ACM
15 years 4 months ago
Scheduling to minimize power consumption using submodular functions
We develop logarithmic approximation algorithms for extremely general formulations of multiprocessor multiinterval offline task scheduling to minimize power usage. Here each proce...
Erik D. Demaine, Morteza Zadimoghaddam
ALMOB
2008
95views more  ALMOB 2008»
15 years 4 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
BMCBI
2010
95views more  BMCBI 2010»
15 years 4 months ago
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
BMCBI
2010
105views more  BMCBI 2010»
15 years 4 months ago
Effects of scanning sensitivity and multiple scan algorithms on microarray data quality
Background: Maximizing the utility of DNA microarray data requires optimization of data acquisition through selection of an appropriate scanner setting. To increase the amount of ...
Andrew Williams, Errol M. Thomson
151
Voted
BMCBI
2010
123views more  BMCBI 2010»
15 years 4 months ago
Decoding HMMs using the k best paths: algorithms and applications
Background: Traditional algorithms for hidden Markov model decoding seek to maximize either the probability of a state path or the number of positions of a sequence assigned to th...
Daniel G. Brown 0001, Daniil Golod