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» Maximum likelihood of phylogenetic networks
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IPPS
2007
IEEE
15 years 6 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...
95
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CCECE
2006
IEEE
15 years 5 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
ICML
2005
IEEE
16 years 17 days ago
Efficient discriminative learning of Bayesian network classifier via boosted augmented naive Bayes
The use of Bayesian networks for classification problems has received significant recent attention. Although computationally efficient, the standard maximum likelihood learning me...
Yushi Jing, Vladimir Pavlovic, James M. Rehg
EMMCVPR
2003
Springer
15 years 5 months ago
Asymptotic Characterization of Log-Likelihood Maximization Based Algorithms and Applications
The asymptotic distribution of estimates that are based on a sub-optimal search for the maximum of the log-likelihood function is considered. In particular, estimation schemes that...
Doron Blatt, Alfred O. Hero
JCB
2006
124views more  JCB 2006»
14 years 11 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...