Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
Mikhail A. Roytberg, Anna Gambin, Laurent No&eacut...
This is a discursive paper. That is, it shows some formulas (but only as examples so that the reader may be convinced that there is, perhaps, some substance to our claims), no theo...
Abstract. UML models consist of several diagrams of different types describing different views of a software system ranging from specifications of the static system structure to de...
Abstract. This paper introduces a method to generate efficient vectorized implementations of small stride permutations using only vector load and vector shuffle instructions. These...
Abstract--The current trend in high performance computing is to aggregate ever larger numbers of processing and interconnection elements in order to achieve desired levels of compu...
Jim M. Brandt, Bert J. Debusschere, Ann C. Gentile...