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POPL
2005
ACM
16 years 5 days ago
Permission accounting in separation logic
A lightweight logical approach to race-free sharing of heap storage between concurrent threads is described, based on the notion of permission to access. Transfer of permission be...
Richard Bornat, Cristiano Calcagno, Peter W. O'Hea...
RECOMB
2008
Springer
16 years 5 days ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
RECOMB
2005
Springer
16 years 5 days ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
RECOMB
2004
Springer
16 years 5 days ago
Comparing in situ mRNA expression patterns of drosophila embryos
In situ staining of a target mRNA at several time points during the development of a D. melanogaster embryo gives one a detailed spatio-temporal view of the expression pattern of ...
Hanchuan Peng, Eugene W. Myers
CADE
2004
Springer
16 years 5 days ago
Rewriting Logic Semantics: From Language Specifications to Formal Analysis Tools
Formal semantic definitions of concurrent languages, when specified in a well-suited semantic framework and supported by generic and efficient formal tools, can be the basis of pow...
José Meseguer, Grigore Rosu
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