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» Models and Methods in Comparative Genomics
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147
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ISCI
2008
124views more  ISCI 2008»
15 years 3 months ago
A weighted rough set based method developed for class imbalance learning
In this paper, we introduce weights into Pawlak rough set model to balance the class distribution of a data set and develop a weighted rough set based method to deal with the clas...
Jinfu Liu, Qinghua Hu, Daren Yu
132
Voted
BMCBI
2006
95views more  BMCBI 2006»
15 years 3 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
135
Voted
BMCBI
2006
104views more  BMCBI 2006»
15 years 3 months ago
SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools
Background: Deluged by the rate and complexity of completed genomic sequences, the need to align longer sequences becomes more urgent, and many more tools have thus been developed...
Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...
110
Voted
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
15 years 9 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
148
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BIOINFORMATICS
2002
146views more  BIOINFORMATICS 2002»
15 years 3 months ago
A duplication growth model of gene expression networks
Motivation: There has been considerable interest in developing computational techniques for inferring genetic regulatory networks from whole-genome expression profiles. When expre...
Ashish Bhan, David J. Galas, T. Gregory Dewey