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» Multiple Sequence Alignment Using Reconfigurable Computing
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IPPS
2007
IEEE
15 years 4 months ago
On the Power of the Multiple Associative Computing (MASC) Model Related to That of Reconfigurable Bus-Based Models
: The MASC model is a multi-SIMD model that uses control parallelism to coordinate the interaction of data parallel threads. It supports a generalized associative style of parallel...
Mingxian Jin, Johnnie W. Baker
BMCBI
2007
130views more  BMCBI 2007»
14 years 9 months ago
HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying e
Background: Profile Hidden Markov Models (HMM) are statistical representations of protein families derived from patterns of sequence conservation in multiple alignments and have b...
Prashant K. Srivastava, Dhwani K. Desai, Soumyadee...
BMCBI
2006
121views more  BMCBI 2006»
14 years 9 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...
RECOMB
2006
Springer
15 years 10 months ago
CONTRAlign: Discriminative Training for Protein Sequence Alignment
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
Chuong B. Do, Samuel S. Gross, Serafim Batzoglou