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BMEI
2008
IEEE
15 years 4 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
JUCS
2000
91views more  JUCS 2000»
14 years 9 months ago
Syntax, Parsing and Production of Natural Language in a Framework of Information Compression by Multiple Alignment, Unification
This article introduces the idea that information compression by multiple alignment, unification and search (ICMAUS) provides a framework within which natural language syntax may ...
J. Gerard Wolff
BMCBI
2008
125views more  BMCBI 2008»
14 years 9 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
BMCBI
2011
14 years 1 months ago
Improving pan-genome annotation using whole genome multiple alignment
Background: Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations c...
Samuel V. Angiuoli, Julie C. Dunning Hotopp, Steve...
BMCBI
2005
100views more  BMCBI 2005»
14 years 9 months ago
Scoredist: A simple and robust protein sequence distance estimator
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
Erik L. L. Sonnhammer, Volker Hollich