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» Multiple alignment by sequence annealing
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79
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BMCBI
2005
190views more  BMCBI 2005»
14 years 9 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
WABI
2010
Springer
167views Bioinformatics» more  WABI 2010»
14 years 8 months ago
Quantifying the Strength of Natural Selection of a Motif Sequence
Quantification of selective pressures on regulatory sequences is a central question in studying the evolution of gene regulatory networks. Previous methods focus primarily on sing...
Chen-Hsiang Yeang
BMCBI
2006
129views more  BMCBI 2006»
14 years 9 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
101
Voted
BMCBI
2008
101views more  BMCBI 2008»
14 years 9 months ago
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related
Background: For many types of analyses, data about gene structure and locations of non-coding regions of genes are required. Although a vast amount of genomic sequence data is ava...
Oliver Keller, Florian Odronitz, Mario Stanke, Mar...
WWW
2001
ACM
15 years 10 months ago
IEPAD: information extraction based on pattern discovery
The research in information extraction (IE) regards the generation of wrappers that can extract particular information from semistructured Web documents. Similar to compiler gener...
Chia-Hui Chang, Shao-Chen Lui