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IPPS
2010
IEEE
15 years 4 months ago
Measuring properties of molecular surfaces using ray casting
Molecular geometric properties, such as volume, exposed surface area, and occurrence of internal cavities, are important inputs to many applications in molecular modeling. In this ...
Mike Phillips, Iliyan Georgiev, Anna Katharina Deh...
IPPS
2007
IEEE
16 years 25 days ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
HIPC
2007
Springer
16 years 21 days ago
A Scalable Asynchronous Replication-Based Strategy for Fault Tolerant MPI Applications
As computational clusters increase in size, their mean-time-to-failure reduces. Typically checkpointing is used to minimize the loss of computation. Most checkpointing techniques, ...
John Paul Walters, Vipin Chaudhary
IPPS
2007
IEEE
16 years 25 days ago
Low-Overhead LogGP Parameter Assessment for Modern Interconnection Networks
Network performance measurement and prediction is very important to predict the running time of high performance computing applications. The LogP model family has been proven to b...
Torsten Hoefler, Andre Lichei, Wolfgang Rehm
ICS
1998
Tsinghua U.
15 years 10 months ago
Multipath Execution: Opportunities and Limits
Even sophisticated branch-prediction techniques necessarily suffer some mispredictions, and even relatively small mispredict rates hurt performance substantially in current-genera...
Pritpal S. Ahuja, Kevin Skadron, Margaret Martonos...