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JCB
2002
160views more  JCB 2002»
14 years 9 months ago
Inference from Clustering with Application to Gene-Expression Microarrays
There are many algorithms to cluster sample data points based on nearness or a similarity measure. Often the implication is that points in different clusters come from different u...
Edward R. Dougherty, Junior Barrera, Marcel Brun, ...
BMCBI
2005
88views more  BMCBI 2005»
14 years 9 months ago
Using large-scale perturbations in gene network reconstruction
Background: Recent analysis of the yeast gene network shows that most genes have few inputs, indicating that enumerative gene reconstruction methods are both useful and computatio...
Thomas MacCarthy, Andrew Pomiankowski, Robert Seym...
FMCAD
2007
Springer
15 years 4 months ago
Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs
Abstract— The relationship between changes in gene expression and physical characteristics associated with Down syndrome is not well understood. Chromosome 21 genes interact with...
Neha Rungta, Hyrum Carroll, Eric G. Mercer, Randal...
BMCBI
2004
150views more  BMCBI 2004»
14 years 9 months ago
Graph-based iterative Group Analysis enhances microarray interpretation
Background: One of the most time-consuming tasks after performing a gene expression experiment is the biological interpretation of the results by identifying physiologically impor...
Rainer Breitling, Anna Amtmann, Pawel Herzyk
NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 23 days ago
Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
Tomato Functional Genomics Database (TFGD) provides a comprehensive resource to store, query, mine, analyze, visualize and integrate large-scale tomato functional genomics data se...
Zhangjun Fei, Je-Gun Joung, Xuemei Tang, Yi Zheng,...