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ALMOB
2006
138views more  ALMOB 2006»
15 years 15 days ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
BMCBI
2006
152views more  BMCBI 2006»
15 years 15 days ago
A two-stage approach for improved prediction of residue contact maps
Background: Protein topology representations such as residue contact maps are an important intermediate step towards ab initio prediction of protein structure. Although improvemen...
Alessandro Vullo, Ian Walsh, Gianluca Pollastri
BMCBI
2006
129views more  BMCBI 2006»
15 years 14 days ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
90
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BMCBI
2006
133views more  BMCBI 2006»
15 years 14 days ago
Web-based analysis of the mouse transcriptome using Genevestigator
Background: Gene function analysis often requires a complex and laborious sequence of laboratory and computer-based experiments. Choosing an effective experimental design generall...
Oliver Laule, Matthias Hirsch-Hoffmann, Tomas Hruz...
108
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COMCOM
2006
88views more  COMCOM 2006»
15 years 14 days ago
Using attack graphs for correlating, hypothesizing, and predicting intrusion alerts
To defend against multi-step intrusions in high-speed networks, efficient algorithms are needed to correlate isolated alerts into attack scenarios. Existing correlation methods us...
Lingyu Wang, Anyi Liu, Sushil Jajodia
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