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ECCB
2008
IEEE
15 years 4 months ago
Functional coherence in domain interaction networks
Motivation: Extracting functional information from protein–protein interactions (PPI) poses significant challenges arising from the noisy, incomplete, generic and static nature...
Jayesh Pandey, Mehmet Koyutürk, Shankar Subra...
ICMCS
2007
IEEE
131views Multimedia» more  ICMCS 2007»
15 years 4 months ago
Semantic Retrieval with Enhanced Matchmaking and Multi-Modality Ontology
This paper presents a method for automatically annotating and retrieving animal images. Our model is a multi-modality ontology extended from our previous works in the sense that b...
Huan Wang, Liang-Tien Chia, Song Liu
UAI
2003
14 years 11 months ago
On the Convergence of Bound Optimization Algorithms
Many practitioners who use EM and related algorithms complain that they are sometimes slow. When does this happen, and what can be done about it? In this paper, we study the gener...
Ruslan Salakhutdinov, Sam T. Roweis, Zoubin Ghahra...
BMCBI
2010
113views more  BMCBI 2010»
14 years 10 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
BMCBI
2010
105views more  BMCBI 2010»
14 years 10 months ago
Predicting phenotypic traits of prokaryotes from protein domain frequencies
Background: Establishing the relationship between an organism's genome sequence and its phenotype is a fundamental challenge that remains largely unsolved. Accurately predict...
Thomas Lingner, Stefanie Mühlhausen, Toni Gab...