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» New Algorithms for SIMD Alignment
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161
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JMLR
2012
13 years 2 months ago
Algorithms for Learning Kernels Based on Centered Alignment
This paper presents new and effective algorithms for learning kernels. In particular, as shown by our empirical results, these algorithms consistently outperform the so-called uni...
Corinna Cortes, Mehryar Mohri, Afshin Rostamizadeh
ALMOB
2006
106views more  ALMOB 2006»
15 years 13 days ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
108
Voted
JCB
2002
116views more  JCB 2002»
15 years 1 days ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
88
Voted
ISBI
2007
IEEE
15 years 6 months ago
Validation of a New Optimisation Algorithm for Registration Tasks in Medical Imaging
A number of problems frequently encountered in brain image analysis can be conveniently solved within a registration framework, such as alignment of mono- or multi-sequence Magnet...
Nicolas Wiest-Daesslé, Sylvain Prima, Sean ...
78
Voted
RECOMB
2001
Springer
16 years 21 days ago
Algorithms for phylogenetic footprinting
Phylogenetic footprinting is a comparative genomics approach for predicting transcription factor binding sites, where a set of orthologous regulatory regions are compared and short...
Mathieu Blanchette