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ICASSP
2008
IEEE
15 years 6 months ago
High-performance scheduling algorithm for partially parallel LDPC decoder
In this paper, we propose a new scheduling algorithm for the overlapped message passing decoding, which can be applied to general low-density parity check (LDPC) codes. The partia...
Cheng-Zhou Zhan, Xin-Yu Shih, An-Yeu Wu
BMCBI
2011
14 years 3 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
BMCBI
2010
143views more  BMCBI 2010»
14 years 12 months ago
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location inf
Background: Graph drawing is one of the important techniques for understanding biological regulations in a cell or among cells at the pathway level. Among many available layout al...
Kaname Kojima, Masao Nagasaki, Satoru Miyano
BMCBI
2007
128views more  BMCBI 2007»
14 years 11 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne
CLUSTER
2002
IEEE
14 years 11 months ago
Energy-Efficient Multicasting of Session Traffic in Bandwidth- and Transceiver-Limited Wireless Networks
In this paper, we address the impact of resource limitations on the operation and performance of the broadcasting and multicasting schemes developed for infrastructureless wireless...
Jeffrey E. Wieselthier, Gam D. Nguyen, Anthony Eph...