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BMCBI
2007
152views more  BMCBI 2007»
15 years 3 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
154
Voted
ICDM
2009
IEEE
233views Data Mining» more  ICDM 2009»
15 years 10 months ago
Semi-Supervised Sequence Labeling with Self-Learned Features
—Typical information extraction (IE) systems can be seen as tasks assigning labels to words in a natural language sequence. The performance is restricted by the availability of l...
Yanjun Qi, Pavel Kuksa, Ronan Collobert, Kunihiko ...
ALMOB
2006
106views more  ALMOB 2006»
15 years 3 months ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
162
Voted
BMCBI
2011
14 years 7 months ago
Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences
Background: While there are many methods for predicting protein-protein interaction, very few can determine the specific site of interaction on each protein. Characterization of t...
Adam Amos-Binks, Catalin Patulea, Sylvain Pitre, A...
ICPP
2009
IEEE
15 years 10 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott