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» OLAP on sequence data
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160
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VLDB
2005
ACM
162views Database» more  VLDB 2005»
15 years 9 months ago
FiST: Scalable XML Document Filtering by Sequencing Twig Patterns
In recent years, publish-subscribe (pub-sub) systems based on XML document filtering have received much attention. In a typical pubsub system, subscribed users specify their inte...
Joonho Kwon, Praveen Rao, Bongki Moon, Sukho Lee
137
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SSDBM
2003
IEEE
141views Database» more  SSDBM 2003»
15 years 9 months ago
The ed-tree: An Index for Large DNA Sequence Databases
The growing interest in genomic research has caused an explosive growth in the size of DNA databases making it increasely challenging to perform searches on them. In this paper, w...
Zhenqiang Tan, Xia Cao, Beng Chin Ooi, Anthony K. ...
143
Voted
CSR
2006
Springer
15 years 7 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
133
Voted
BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
15 years 5 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
124
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ALMOB
2007
151views more  ALMOB 2007»
15 years 3 months ago
Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Background: The optimal score for ungapped local alignments of infinitely long random sequences is known to follow a Gumbel extreme value distribution. Less is known about the imp...
Stefan Wolfsheimer, Bernd Burghardt, Alexander K. ...