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IPPS
2009
IEEE
15 years 11 months ago
Implementing protein seed-based comparison algorithm on the SGI RASC-100 platform
This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for finding similarities between a large set of protein sequences and full genomes....
Van Hoa Nguyen, Alexandre Cornu, Dominique Lavenie...
CONCUR
2009
Springer
15 years 11 months ago
Perspectives on Transactional Memory
Abstract. We examine the role of transactional memory from two perspectives: that of a programming language with atomic actions and that of implementations of the language. We argu...
Martín Abadi, Tim Harris
IPPS
2007
IEEE
15 years 10 months ago
Performance and Scalability of a Component-Based Grid Application
Component-based development has emerged as an effective approach to building flexible systems, but there is little experience in applying this approach to Grid programming. This p...
Nikos Parlavantzas, Matthieu Morel, Vladimir Getov...
PDP
2007
IEEE
15 years 10 months ago
An Annotation-Based Framework for Parallel Computing
This paper presents a programming language for parallel computing based on code annotations. It has similar goals and philosophy as OpenMP but it is more tightly coupled to the ob...
Carlos A. Cunha, João Luís Sobral
IPPS
2005
IEEE
15 years 10 months ago
EMPS: An Environment for Memory Performance Studies
This paper describes an overview of Environment for Memory Performance Studies (EMPS). EMPS is a framework to allow different data gathering and simulation tools to be composed to...
Jeffrey K. Hollingsworth, Allan Snavely, Simone Sb...