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IPPS
2009
IEEE
16 years 1 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
IPPS
2009
IEEE
16 years 1 months ago
Enabling high-performance memory migration for multithreaded applications on LINUX
As the number of cores per machine increases, memory architectures are being redesigned to avoid bus contention and sustain higher throughput needs. The emergence of Non-Uniform M...
Brice Goglin, Nathalie Furmento
ICDCS
2007
IEEE
16 years 21 days ago
A Virtual Node-Based Tracking Algorithm for Mobile Networks
— We introduce a virtual-node based mobile object tracking algorithm for mobile sensor networks, VINESTALK. The algorithm uses the Virtual Stationary Automata programming layer, ...
Tina Nolte, Nancy A. Lynch
IPPS
2007
IEEE
16 years 21 days ago
Middleware and Performance Issues for Computational Finance Applications on Blue Gene/L
We discuss real-world case studies involving the implementation of a web services middleware tier for the IBM Blue Gene/L supercomputer to support financial business applications...
Thomas Phan, Ramesh Natarajan, Satoki Mitsumori, H...
GCC
2007
Springer
16 years 17 days ago
Improving the Performance of MPI Applications over Computational Grid
The Message Passing Interface (MPI) is a standard in parallel computing, and can also be used as a highperformance programming model for Grid application development. How to execu...
Bo Song, Guangwen Yang, Qiming Fang