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» On Complexity Measures for Biological Sequences
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GECCO
2004
Springer
15 years 2 months ago
Evolved Motor Primitives and Sequences in a Hierarchical Recurrent Neural Network
This study describes how complex goal-directed behavior can evolve in a hierarchically organized recurrent neural network controlling a simulated Khepera robot. Different types of ...
Rainer W. Paine, Jun Tani
78
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ICPP
2007
IEEE
15 years 3 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
BMCBI
2004
134views more  BMCBI 2004»
14 years 9 months ago
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
Ricardo Z. N. Vêncio, Helena Brentani, Diogo...
BMCBI
2010
95views more  BMCBI 2010»
14 years 9 months ago
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA
Background: In recent years, the number of available RNA structures has rapidly grown reflecting the increased interest on RNA biology. Similarly to the studies carried out two de...
Emidio Capriotti, Marc A. Martí-Renom
CMSB
2004
Springer
15 years 2 months ago
Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
Jasmin Fisher, David Harel, E. Jane Albert Hubbard...