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» On Probabilistic Alternating Simulations
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BMCBI
2004
94views more  BMCBI 2004»
14 years 9 months ago
GASP: Gapped Ancestral Sequence Prediction for proteins
Background: The prediction of ancestral protein sequences from multiple sequence alignments is useful for many bioinformatics analyses. Predicting ancestral sequences is not a sim...
Richard J. Edwards, Denis C. Shields
JCC
2002
127views more  JCC 2002»
14 years 9 months ago
Effective Born radii in the generalized Born approximation: The importance of being perfect
: Generalized Born (GB) models provide, for many applications, an accurate and computationally facile estimate of the electrostatic contribution to aqueous solvation. The GB models...
Alexey Onufriev, David A. Case, Donald Bashford
TPDS
2002
142views more  TPDS 2002»
14 years 9 months ago
MediaWorm: A QoS Capable Router Architecture for Clusters
With the increasing use of clusters in real-time applications, it has become essential to design high performance networks with Quality-of-ServiceQoS guarantees. In this paper, we...
Ki Hwan Yum, Eun Jung Kim, Chita R. Das, Aniruddha...
BMCBI
2011
14 years 4 months ago
PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination
Background: We present a novel method to encode ambiguously aligned regions in fixed multiple sequence alignments by ‘Pairwise Identity and Cost Scores Ordination’ (PICS-Ord)....
Robert K. Luecking, Brendan P. Hodkinson, Alexandr...
JCDL
2011
ACM
221views Education» more  JCDL 2011»
14 years 23 days ago
Integrating implicit structure visualization with authoring promotes ideation
We need to harness the growing wealth of information in digital libraries to support intellectual work involving creative and exploratory processes. Prior research on hypertext au...
Andrew M. Webb, Andruid Kerne