314 search results - page 9 / 63 » On Suboptimal Alignments of Biological Sequences |
RECOMB
2006
Springer
15 years 12 months ago
2006
Springer
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
ICPP
2007
IEEE
15 years 6 months ago
2007
IEEE
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
106
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ALMOB
2006
14 years 11 months ago
2006
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
101
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CIBCB
2007
IEEE
15 years 6 months ago
2007
IEEE
Abstract— Multiple sequence alignment is an important problem in computational biology. A-star is an algorithm that can be used to find exact alignments. We present a simple mod...
118
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BMCBI
2005
14 years 11 months ago
2005
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...