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» On the Adequateness of the Connection Method
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BMCBI
2007
160views more  BMCBI 2007»
14 years 10 months ago
Optimization based automated curation of metabolic reconstructions
Background: Currently, there exists tens of different microbial and eukaryotic metabolic reconstructions (e.g., Escherichia coli, Saccharomyces cerevisiae, Bacillus subtilis) with...
Vinay Satish Kumar, Madhukar S. Dasika, Costas D. ...
DEBU
2010
180views more  DEBU 2010»
14 years 10 months ago
Searching RDF Graphs with SPARQL and Keywords
The proliferation of knowledge-sharing communities like Wikipedia and the advances in automated information extraction from Web pages enable the construction of large knowledge ba...
Shady Elbassuoni, Maya Ramanath, Ralf Schenkel, Ge...
ALMOB
2006
109views more  ALMOB 2006»
14 years 10 months ago
A novel functional module detection algorithm for protein-protein interaction networks
Background: The sparse connectivity of protein-protein interaction data sets makes identification of functional modules challenging. The purpose of this study is to critically eva...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
BMCBI
2006
118views more  BMCBI 2006»
14 years 10 months ago
Low degree metabolites explain essential reactions and enhance modularity in biological networks
Background: Recently there has been a lot of interest in identifying modules at the level of genetic and metabolic networks of organisms, as well as in identifying single genes an...
Areejit Samal, Shalini Singh, Varun Giri, Sandeep ...
BMCBI
2007
93views more  BMCBI 2007»
14 years 10 months ago
The topology of metabolic isotope labeling networks
Background: Metabolic Flux Analysis (MFA) based on isotope labeling experiments (ILEs) is a widely established tool for determining fluxes in metabolic pathways. Isotope labeling ...
Michael Weitzel, Wolfgang Wiechert, Katharina N&ou...