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» On the Complexity of Computing Evolutionary Trees
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BMCBI
2005
137views more  BMCBI 2005»
14 years 9 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
CIDM
2007
IEEE
15 years 1 months ago
Efficient Kernel-based Learning for Trees
Kernel methods are effective approaches to the modeling of structured objects in learning algorithms. Their major drawback is the typically high computational complexity of kernel ...
Fabio Aiolli, Giovanni Da San Martino, Alessandro ...
IPPS
2007
IEEE
15 years 4 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...
FLOPS
2004
Springer
15 years 3 months ago
DDT: a Declarative Debugging Tool for Functional-Logic Languages
We present a graphical tool for the declarative debugging of wrong answers in functional-logic languages. The tool, integrated in the system T OY, can be used to navigate a computa...
Rafael Caballero, Mario Rodríguez-Artalejo
CIE
2007
Springer
15 years 4 months ago
The Complexity Ecology of Parameters: An Illustration Using Bounded Max Leaf Number
In the framework of parameterized complexity, exploring how one parameter affects the complexity of a different parameterized (or unparameterized problem) is of general interest....
Michael R. Fellows, Frances A. Rosamond