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» On the Effectiveness of Constraints Sets in Clustering Genes
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BMCBI
2008
86views more  BMCBI 2008»
14 years 9 months ago
Predicting protein linkages in bacteria: Which method is best depends on task
Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...
JCB
2007
198views more  JCB 2007»
14 years 9 months ago
Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation
Many bioinformatics problems can implicitly depend on estimating large-scale covariance matrix. The traditional approaches tend to give rise to high variance and low accuracy esti...
Dongxiao Zhu, Alfred O. Hero III
BMCBI
2007
141views more  BMCBI 2007»
14 years 9 months ago
HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
Erik Larsson, Per Lindahl, Petter Mostad
ALMOB
2006
106views more  ALMOB 2006»
14 years 9 months ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
EDBT
2009
ACM
106views Database» more  EDBT 2009»
15 years 1 months ago
AlphaSum: size-constrained table summarization using value lattices
Consider a scientist who wants to explore multiple data sets to select the relevant ones for further analysis. Since the visualization real estate may put a stringent constraint o...
K. Selçuk Candan, Huiping Cao, Yan Qi 0002,...