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» On the Optimality of Spiral Search
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CSB
2004
IEEE
126views Bioinformatics» more  CSB 2004»
15 years 5 months ago
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer
Boosted PRIM (Patient Rule Induction Method) is a new algorithm developed for two-class classification problems. PRIM is a variation of those Tree-Based methods ( [4] Ch9.3), seek...
Pei Wang, Young Kim, Jonathan R. Pollack, Robert T...
BIRD
2008
Springer
15 years 3 months ago
Efficient Seeding Techniques for Protein Similarity Search
Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
Mikhail A. Roytberg, Anna Gambin, Laurent No&eacut...
DATESO
2007
157views Database» more  DATESO 2007»
15 years 3 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
IJCAI
2007
15 years 3 months ago
A Heuristic Search Approach to Planning with Temporally Extended Preferences
In this paper we propose a suite of techniques for planning with temporally extended preferences (TEPs). To this end, we propose a method for compiling TEP planning problems into ...
Jorge A. Baier, Fahiem Bacchus, Sheila A. McIlrait...
NIPS
2008
15 years 3 months ago
Dynamic visual attention: searching for coding length increments
A visual attention system should respond placidly when common stimuli are presented, while at the same time keep alert to anomalous visual inputs. In this paper, a dynamic visual ...
Xiaodi Hou, Liqing Zhang